SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g12670

Feature Type:gene_model
Chromosome:Gm11
Start:9029592
stop:9031121
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g12670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49320AT Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280 SoyBaseE_val: 9.00E-70ISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0000326GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03181PFAM BURP domain JGI ISS
UniRef100_G7J6J4UniRef Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6J4_MEDTR SoyBaseE_val: 3.00E-127ISS
UniRef100_I1LJF4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJF4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g12670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g12670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g119100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g12670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g12670
>Glyma11g12670.1   sequence type=CDS   gene model=Glyma11g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCAAGCAGCAAAATGGGTGAAAAATATAAACCTTGGATCATCTTTCTTCATCTACTAGTAATCACGTGTTCCTGCAATAGAAGCTGCAGAGCCAGGGGATTGATTGAAACAGAAGACAAATTCTTCAAAGCAACCTCAAATGATCATCATGAAACAGAACATGCACATGCTCACTCTCACGTGGATCACATAGATCCTTCTGTGATGGTGTTTTTCACCATCGAAGATTTGAAGGTTGGGAAAACAATGCCTATTCATTTTCCCAAGAGGGACCCTGCAACATCCCCTAAGTTGTGGCCAAGAGAAGAAGCAGATTCACTTCCTTTCTCACTGAACAAACTCCCAAACCTTCTCAAAATCTTCTCTGTATCTCAAAACTCTCCCAAAGCCAAGGCCATGGAAGATACCCTTAGGGAATGTGAGACCAAACCCATCAAAGGAGAGGTAAAATTCTGTGCCACCTCTTTAGAATCCATGCTTGACTTCACTCAAAGCATTCTTGGCTTCACATCTGATCTAAAAGTTTTGTCCACCTCTCACCAAACCAAATCAAGTGTCACTTTCCAAAACTACACTATGTTAGAAAATATCATAGAAATCCCAGCTTCCAAGATGGTGGCTTGCCATACCATGCCTTACCCTTATACAGTTTTTTACTGCCACAGCCAAGAAAGTGAGAACAAGATTTATAGGGTCCCACTTGCTGGTGAAAATGGGGATAGGGTGGATGCTATGGTTGTTTGTCACATGGATACATCACAATGGGGGCATGGTCATGTTTCATTTCAAGTTCTGAAGGTCAAACCGGGAACCACTTCTGTGTGCCACTTTTTCCCAGCAGATCATCTCATCTGGGTTCCCAAACTGCAACCACAAGGTTTTGCAACCATGTGA
Predicted protein sequences of Glyma11g12670
>Glyma11g12670.1   sequence type=predicted peptide   gene model=Glyma11g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHASSKMGEKYKPWIIFLHLLVITCSCNRSCRARGLIETEDKFFKATSNDHHETEHAHAHSHVDHIDPSVMVFFTIEDLKVGKTMPIHFPKRDPATSPKLWPREEADSLPFSLNKLPNLLKIFSVSQNSPKAKAMEDTLRECETKPIKGEVKFCATSLESMLDFTQSILGFTSDLKVLSTSHQTKSSVTFQNYTMLENIIEIPASKMVACHTMPYPYTVFYCHSQESENKIYRVPLAGENGDRVDAMVVCHMDTSQWGHGHVSFQVLKVKPGTTSVCHFFPADHLIWVPKLQPQGFATM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo